Difference between revisions of "E-lab notebooks"

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(Examples:: added to ELN examples)
 
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[[CURATEcamp_2011_grid|>> back to the grid]]
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Notes by Lynn Yarmey:
 
Notes by Lynn Yarmey:
 
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e-Lab Notebooks and OMERO - image curation (http://openmicroscopy.org/site)
 
 
== e-Lab Notebooks and OMERO - image curation (http://openmicroscopy.org/site)  
 
  
 
Discussed relationship with DMPs
 
Discussed relationship with DMPs
  
*Issues:*
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===Issues:===
  
 
*people keep notebooks for many different purposes, have separate styles
 
*people keep notebooks for many different purposes, have separate styles
 
*extracting something from a notebook is dicey to start - so be clear on goal. For example:  patent suit, 7Mil to go through paper notebooks consideration - can you prove provenance from burned CD copy?
 
*extracting something from a notebook is dicey to start - so be clear on goal. For example:  patent suit, 7Mil to go through paper notebooks consideration - can you prove provenance from burned CD copy?
  
*Selection criteria:*
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===Selection criteria:===
 
   
 
   
 
*affordability
 
*affordability
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*curation components - export files, metadata standardization
 
*curation components - export files, metadata standardization
  
Examples:
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===Examples:===
  
 
*CERF (by Rescentris)
 
*CERF (by Rescentris)
 
*Cambridge Soft (owns ChemDraw) - downside, cost plus lots of backend infrastrcuture; somewhat of a layer over Word and Excel. Cambridgesoft was recently bought by Perkin Elmer
 
*Cambridge Soft (owns ChemDraw) - downside, cost plus lots of backend infrastrcuture; somewhat of a layer over Word and Excel. Cambridgesoft was recently bought by Perkin Elmer
*Wiki + Google docs; digital lives study found big problems with legalities in cloud agreements, no promises about longevity, security, etc.
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*Wiki + Google docs; digital lives study found big problems with legalities in cloud agreements, no promises about longevity, security, etc. If "the cloud" is an issue for you or your institution (citation needed?), you can run a local install of MediaWiki, Wordpress, and/or Etherpad.
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*University of Southampton projects with chemistry lab notebooks
  
Open Science vs. Other research approaches
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===Open Science vs. Other research approaches===
  
 
Costs - how to compete with Amazon in terms of cost feasibility for basic file storage.
 
Costs - how to compete with Amazon in terms of cost feasibility for basic file storage.
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*cloud-based applications
 
*cloud-based applications
  
Additional criteria  
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===Additional criteria===
  
 
* uptake
 
* uptake
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* files on disk
 
* files on disk
  
Issue - as soon as you export from a software, you are creating a representation that isn’t usually round-tripable. So what exactly are you archiving? Tension between archival version and actual work
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Issue - as soon as you export from a system to another system (ie. from lab notebook to an archive), you are creating a representation that isn’t usually round-tripable. So what exactly are you archiving? Tension between archival version and actual work.

Latest revision as of 18:52, 17 August 2011

>> back to the grid

Notes by Lynn Yarmey: e-Lab Notebooks and OMERO - image curation (http://openmicroscopy.org/site)

Discussed relationship with DMPs

Issues:

  • people keep notebooks for many different purposes, have separate styles
  • extracting something from a notebook is dicey to start - so be clear on goal. For example: patent suit, 7Mil to go through paper notebooks consideration - can you prove provenance from burned CD copy?

Selection criteria:

  • affordability
  • ease of use
  • ease of access
  • length of trial
  • non-pharmaceutical-based
  • needs to work for users
  • curation components - export files, metadata standardization

Examples:

  • CERF (by Rescentris)
  • Cambridge Soft (owns ChemDraw) - downside, cost plus lots of backend infrastrcuture; somewhat of a layer over Word and Excel. Cambridgesoft was recently bought by Perkin Elmer
  • Wiki + Google docs; digital lives study found big problems with legalities in cloud agreements, no promises about longevity, security, etc. If "the cloud" is an issue for you or your institution (citation needed?), you can run a local install of MediaWiki, Wordpress, and/or Etherpad.
  • University of Southampton projects with chemistry lab notebooks

Open Science vs. Other research approaches

Costs - how to compete with Amazon in terms of cost feasibility for basic file storage.

Phil recommends cloud for virtual machines for pulling out the data from boxes under the desk

  • need applications that are compatible
  • cloud-based applications

Additional criteria

  • uptake
  • backend maintenance (in addition to production archival copy)
  • files on disk

Issue - as soon as you export from a system to another system (ie. from lab notebook to an archive), you are creating a representation that isn’t usually round-tripable. So what exactly are you archiving? Tension between archival version and actual work.